Tools for Protein Structure & Function

Nikolay Dokholyan

H-predictor Tool for predicting protein hinge regions
iFold Web portal for interactive protein folding simulations
iFoldRNA Web portal for three-dimensional RNA structure prediction and folding
Eris Web portal for protein stability estimations

Morgan Giddings

Genome-based Fingerprint Scanning (GFS) Matches MS data to genomic sequence
PROCLAME Protein cleavage and modification prediction
HHM_Score Identification of peptides by tamdem mass spectrometry
FreqAnal Frameshift prediction using heptamer statistics

Brian Kuhlman

RosettaDesign Protein structure prediction and design

Alex Tropsha

QSAR Web Server
ProCAM Protein Core Alignment Map
MuSE Mutation with SNAPP Evaluation
SNAPP Simplicial Neighborhood Analysis of Protein Packing
Motif Library Search simplicial residue neighbor motifs
Motif Threader Identify protein sequences containing a specific pattern